Date of Award
12-2016
Document Type
Thesis
College
College of Arts and Sciences
Degree Program
Biology
Degree Name
Master of Science
Thesis Advisor
Dr. Kristi Westover
Committee Member
Dr. Matthew Stern
Committee Member
Dr. Matthew Heard
Keywords
hantavirus, nucleocapsid, CTL, epitope
Abstract
Hantaviruses pathogenic to humans are exclusive to rodents. Typically each hantavirus is associated with only one host species. Due to their close association, the geographical distributions are the same. Old World species, such as Hantaan hantavirus and Puumala hantavirus, induce symptoms described as the Hemorrhagic Fever with Renal Syndrome (HFRS). The New World hantaviruses, such as Andes hantavirus and Sin Nombre hantavirus, share a suite of symptoms that have been described as Hantavirus Pulmonary Syndrome (HPS). In this study, 16 well-characterized cytotoxic T lymphocytes (CTL) epitopes of the nucleocapsid (N) protein were identified from the literature.
These 16 antigenic regions are reportedly CD8+ epitopes showing reactivity to one or more hantaviruses. A phylogenetic analysis was used to identify closely related sequences called sister pairs. The number of nonsynonymous differences per nonsynonymous site (pN) and the number of synonymous differences per synonymous site (pS) were computed. Comparisons were then made between New World and Old World groups, as well as between pathogenic and non-pathogenic groups. It was expected that there would be evidence of viral escape, measured as elevated pN to pS means in the well characterized CTL epitopes of the N protein. However, evidence of CTL escape was not observed in this study. None of the epitopes exhibited positive selection. The mean pS value was greater than the mean pN value in all cases. The N protein appears to be have been highly conserved throughout most hantaviruses. Numerous epitopes did show evidence of possible negative, or purifying, selection. Because of genus specificity of the various epitopes, future studies comparing substitution rates within genera could be insightful.
Recommended Citation
Sikes, Brian Gerald, "Nucelotide Substitution Rates in Hantavirus CD8+ T-Cell Epitopes" (2016). Graduate Theses. 41.
https://digitalcommons.winthrop.edu/graduatetheses/41
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Biology Commons, Cell and Developmental Biology Commons, Immunology and Infectious Disease Commons